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chrisamiller/genomic-analysis:0.3

Manifest digest

sha256:489eeabe38419e3e9e6f9db4b6f7d4f2209133f26cc83a0be481494983a3cdc7

OS/ARCH

linux/amd64

Compressed size

2.2 GB

Last pushed

over 2 years by chrisamiller

Type

Image

Manifest digest

sha256:489eeabe38419e3e9e6f9db4b6f7d4f2209133f26cc83a0be481494983a3cdc7

Image Layers

Image Layers

1ADD file ... in / 29.02 MB
2CMD ["bash"]0 B
3LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/r-ubuntu org.label-schema.vendor=Rocker Project0 B
4RUN /bin/sh -c useradd -s4.24 KB
5RUN /bin/sh -c apt-get update80.74 MB
6RUN /bin/sh -c echo "en_US.UTF-8845.56 KB
7ENV LC_ALL=en_US.UTF-80 B
8ENV LANG=en_US.UTF-80 B
9ENV DEBIAN_FRONTEND=noninteractive0 B
10ENV TZ=UTC0 B
11RUN /bin/sh -c apt-get update201.06 MB
12CMD ["bash"]0 B
13LABEL Image=for basic ad-hoc bioinformatic0 B
14RUN /bin/sh -c add-apt-repository ppa:c2d4u.team/c2d4u4.0+446.06 MB
15ADD rpackages.R /tmp/ # buildkit252 B
16RUN /bin/sh -c R -f142.45 MB
17RUN /bin/sh -c cd /tmp/63.16 KB
18RUN /bin/sh -c pip install290.01 MB
19COPY /usr/local/bin/samtools /usr/local/bin/samtools # buildkit317.3 KB
20COPY /usr/local/lib/libhts.so* /usr/local/lib/libtinfow.so* /usr/local/lib/ #1.8 MB
21COPY /usr/local/bin/bcftools /usr/local/bin/bcftools # buildkit576.62 KB
22COPY /usr/local/lib/libgsl.so* /usr/local/lib/ # buildkit3.75 MB
23COPY /bin/bam-readcount /bin/bam-readcount/ # buildkit2.23 MB
24COPY bam_readcount_helper.py /usr/bin/bam_readcount_helper.py # buildkit1.25 KB
25RUN /bin/sh -c cd /tmp15.99 MB
26COPY /usr/local/bin/vcftools /usr/local/bin/vcftools # buildkit404.63 KB
27RUN /bin/sh -c cd /opt9.67 MB
28RUN /bin/sh -c cd /opt706.45 MB
29ENV PATH=/opt/gatk-4.5.0.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
30COPY split_interval_list_helper.pl /usr/bin/split_interval_list_helper.pl # buildkit383 B
31RUN /bin/sh -c mkdir -p20.37 MB
32ADD utilities/* /usr/bin/ # buildkit1.48 KB
33RUN /bin/sh -c curl -sSL303.78 MB
34ENV PATH=/opt/gcloud/google-cloud-sdk/bin:/opt/gatk-4.5.0.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
35RUN /bin/sh -c ln -sf467.92 KB
36RUN /bin/sh -c dbus-uuidgen >/etc/machine-id159 B
37RUN /bin/sh -c ln -s238 B

Command

ADD file:29c72d5be8c977acaeb6391aeb23ec27559b594e25a0bb3a6dd280bac2847b7f in /