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chrisamiller/genomic-analysis:0.2

Manifest digest

sha256:d7a8ef7f1dcf7cd4823f9150b55afcb88141b31a3eca3998dbcb7a3f03a5e911

OS/ARCH

linux/amd64

Compressed size

1.35 GB

Last pushed

over 4 years by chrisamiller

Type

Image

Manifest digest

sha256:d7a8ef7f1dcf7cd4823f9150b55afcb88141b31a3eca3998dbcb7a3f03a5e911

Image Layers

Image Layers

1ADD file ... in / 27.24 MB
2CMD ["bash"]0 B
3LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/r-ubuntu org.label-schema.vendor=Rocker Project0 B
4RUN /bin/sh -c useradd docker1.83 KB
5RUN /bin/sh -c apt-get update74.94 MB
6RUN /bin/sh -c echo "en_US.UTF-8843.35 KB
7ENV LC_ALL=en_US.UTF-80 B
8ENV LANG=en_US.UTF-80 B
9ENV DEBIAN_FRONTEND=noninteractive0 B
10ENV TZ=UTC0 B
11RUN /bin/sh -c apt-get update165.27 MB
12CMD ["bash"]0 B
13LABEL Image=for basic ad-hoc bioinformatic0 B
14RUN /bin/sh -c add-apt-repository ppa:c2d4u.team/c2d4u4.0+349.78 MB
15ADD rpackages.R /tmp/ # buildkit209 B
16RUN /bin/sh -c R -f45.77 MB
17RUN /bin/sh -c cd /tmp/62.84 KB
18RUN /bin/sh -c pip install73.17 MB
19COPY /usr/local/bin/samtools /usr/local/bin/samtools # buildkit317.31 KB
20COPY /usr/local/lib/libhts.so* /usr/local/lib/libtinfow.so* /usr/local/lib/ #1.8 MB
21COPY /usr/local/bin/bcftools /usr/local/bin/bcftools # buildkit576.62 KB
22COPY /usr/local/lib/libgsl.so* /usr/local/lib/ # buildkit3.75 MB
23COPY /bin/bam-readcount /bin/bam-readcount/ # buildkit2.23 MB
24COPY bam_readcount_helper.py /usr/bin/bam_readcount_helper.py # buildkit1.24 KB
25RUN /bin/sh -c cd /tmp13.48 MB
26COPY /usr/local/bin/vcftools /usr/local/bin/vcftools # buildkit404.64 KB
27RUN /bin/sh -c cd /opt9.67 MB
28RUN /bin/sh -c cd /opt440.86 MB
29ENV PATH=/opt/gatk-4.2.3.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
30COPY split_interval_list_helper.pl /usr/bin/split_interval_list_helper.pl # buildkit377 B
31RUN /bin/sh -c mkdir -p17.35 MB
32ADD utilities/* /usr/bin/ # buildkit1.48 KB
33RUN /bin/sh -c curl -sSL154.57 MB
34ENV PATH=/opt/gcloud/google-cloud-sdk/bin:/opt/gatk-4.2.3.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
35RUN /bin/sh -c ln -sf466.57 KB
36RUN /bin/sh -c dbus-uuidgen >/etc/machine-id158 B
37RUN /bin/sh -c ln -s235 B

Command

ADD file:122ad323412c2e70b3138d8eb62648c4692989de91be1ffb6b4bf086c8311b62 in /