Sign inSign up

chrisamiller/genomic-analysis:0.2.1

Manifest digest

sha256:a8334706af560f40a90e521275f138ac82eefd4428ccc1126ec8f600d6350024

OS/ARCH

linux/amd64

Compressed size

1.54 GB

Last pushed

almost 4 years by chrisamiller

Type

Image

Manifest digest

sha256:a8334706af560f40a90e521275f138ac82eefd4428ccc1126ec8f600d6350024

Image Layers

Image Layers

1ADD file ... in / 27.24 MB
2CMD ["bash"]0 B
3LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/r-ubuntu org.label-schema.vendor=Rocker0 B
4/bin/sh -c useradd docker &&1.85 KB
5/bin/sh -c apt-get update &&75.47 MB
6/bin/sh -c echo "en_US.UTF-8 UTF-8"843.34 KB
7ENV LC_ALL=en_US.UTF-80 B
8ENV LANG=en_US.UTF-80 B
9ENV DEBIAN_FRONTEND=noninteractive0 B
10ENV TZ=UTC0 B
11/bin/sh -c apt-get update 176.84 MB
12CMD ["bash"]0 B
13LABEL Image=for basic ad-hoc bioinformatic0 B
14RUN /bin/sh -c add-apt-repository ppa:c2d4u.team/c2d4u4.0+367.97 MB
15ADD rpackages.R /tmp/ # buildkit248 B
16RUN /bin/sh -c R -f130.02 MB
17RUN /bin/sh -c cd /tmp/62.83 KB
18RUN /bin/sh -c pip install73.57 MB
19COPY /usr/local/bin/samtools /usr/local/bin/samtools # buildkit317.31 KB
20COPY /usr/local/lib/libhts.so* /usr/local/lib/libtinfow.so* /usr/local/lib/ #1.8 MB
21COPY /usr/local/bin/bcftools /usr/local/bin/bcftools # buildkit576.62 KB
22COPY /usr/local/lib/libgsl.so* /usr/local/lib/ # buildkit3.75 MB
23COPY /bin/bam-readcount /bin/bam-readcount/ # buildkit2.23 MB
24COPY bam_readcount_helper.py /usr/bin/bam_readcount_helper.py # buildkit1.25 KB
25RUN /bin/sh -c cd /tmp13.48 MB
26COPY /usr/local/bin/vcftools /usr/local/bin/vcftools # buildkit404.64 KB
27RUN /bin/sh -c cd /opt9.67 MB
28RUN /bin/sh -c cd /opt440.86 MB
29ENV PATH=/opt/gatk-4.2.3.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
30COPY split_interval_list_helper.pl /usr/bin/split_interval_list_helper.pl # buildkit381 B
31RUN /bin/sh -c mkdir -p20.26 MB
32ADD utilities/* /usr/bin/ # buildkit1.48 KB
33RUN /bin/sh -c curl -sSL233.76 MB
34ENV PATH=/opt/gcloud/google-cloud-sdk/bin:/opt/gatk-4.2.3.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
35RUN /bin/sh -c ln -sf466.51 KB
36RUN /bin/sh -c dbus-uuidgen >/etc/machine-id159 B
37RUN /bin/sh -c ln -s236 B

Command

ADD file:8a50ad78a668527e974b05a3dfbfd64760de3cb643ceb8a8805d21f6ceab3389 in /