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chrisamiller/docker-genomic-analysis:latest

Manifest digest

sha256:f8bf2b17d4646255e43815f1679cd2edae86d8b619d8c8186d83c29464c3dd8f

OS/ARCH

linux/amd64

Compressed size

2.35 GB

Last pushed

over 8 years by chrisamiller

Type

Image

Manifest digest

sha256:f8bf2b17d4646255e43815f1679cd2edae86d8b619d8c8186d83c29464c3dd8f

Image Layers

Image Layers

1ADD file ... in / 40.97 MB
2/bin/sh -c set -xe &&847 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*620 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'854 B
5/bin/sh -c mkdir -p /run/systemd169 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Chris Miller <[email protected]>0 B
8LABEL Image=for basic ad-hoc0 B
9/bin/sh -c apt-get update -y335.8 MB
10ENV HTSLIB_INSTALL_DIR=/opt/htslib0 B
11WORKDIR /tmp0 B
12/bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.3.2/htslib-1.3.2.tar.bz2 &&20.57 MB
13ENV SAMTOOLS_INSTALL_DIR=/opt/samtools0 B
14WORKDIR /tmp0 B
15/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2 &&4.58 MB
16ENV SAMTOOLS_ROOT=/opt/samtools0 B
17/bin/sh -c apt-get update &&17.99 MB
18COPY file:a9934c0aedee2a3d4e070f095b549b3e215cf9cca5d9e4ce6dbc5d924f0d3fb2 in /usr/bin/bam_readcount_helper.py 1.23 KB
19ENV BCFTOOLS_INSTALL_DIR=/opt/bcftools0 B
20WORKDIR /tmp0 B
21/bin/sh -c wget https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2 &&3.48 MB
22ENV picard_version=2.4.10 B
23/bin/sh -c apt-get update &&252.96 MB
24COPY file:0d5d9b4ade59782802735558e6d0b074877f3f0a48aff5aa9ba193cd9c333502 in /usr/bin/split_interval_list_helper.pl 388 B
25/bin/sh -c apt-get update &&65.1 MB
26WORKDIR /usr/local0 B
27/bin/sh -c git clone https://github.com/arq5x/bedtools2.git59.68 MB
28ENV ZIP=vcftools-0.1.14.tar.gz0 B
29ENV URL=https://github.com/vcftools/vcftools/releases/download/v0.1.14/0 B
30ENV FOLDER=vcftools-0.1.140 B
31ENV DST=/tmp0 B
32/bin/sh -c wget $URL/$ZIP -O3.89 MB
33/bin/sh -c mkdir -p /tmp/ucsc10.57 MB
34ARG R_VERSION0 B
35ARG BUILD_DATE0 B
36ENV BUILD_DATE=2017-06-200 B
37ENV R_VERSION=3.4.00 B
38/bin/sh -c apt-get update &&636.15 MB
39ADD file ... in /tmp/ 318 B
40/bin/sh -c R -f /tmp/rpackages.R165.07 MB
41/bin/sh -c cd / &&1.01 KB
42ENV CONDA_DIR=/opt/conda0 B
43ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
44/bin/sh -c cd /tmp &&38.14 MB
45/bin/sh -c conda install --yes353.81 MB
46/bin/sh -c conda create --quiet353.7 MB
47COPY file:df7b828553845b28ddb6859e3455077ab76fdbc086b43464bcec887fc80718a5 in /usr/bin/tsv2xlsx.py 1.04 KB
48/bin/sh -c apt-get update &&46.18 MB
49/bin/sh -c ln -sf /usr/share/zoneinfo/America/Chicago404.42 KB
50/bin/sh -c apt-get update &&894.85 KB
51/bin/sh -c dbus-uuidgen >/etc/machine-id159 B

Command

ADD file:c753df38640ab6e246d9e66f0cef7156b7003976080b1e0b83e5717cd6ef1725 in /