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chambm/omicron-cfncluster:release_19.09

Manifest digest

sha256:ce96096bf84dee15ae9488b5acff4bbd51227d5e97cd302533b34503d11bf4df

OS/ARCH

linux/amd64

Compressed size

2.56 GB

Last pushed

over 5 years by chambm

Type

Image

Manifest digest

sha256:ce96096bf84dee15ae9488b5acff4bbd51227d5e97cd302533b34503d11bf4df

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.54 KB
3/bin/sh -c set -xe &&849 B
4/bin/sh -c mkdir -p /run/systemd162 B
5CMD ["/bin/bash"]0 B
6MAINTAINER Björn A. Grüning,0 B
7ARG GALAXY_RELEASE0 B
8ARG GALAXY_REPO0 B
9ENV GALAXY_RELEASE=release_19.09 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central0 B
10ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.yml GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml0 B
11/bin/sh -c echo "force-unsafe-io" >4.89 MB
12/bin/sh -c groupadd -r postgres165.94 MB
13ADD file ... in /home/galaxy/.bashrc 1.7 KB
14/bin/sh -c curl -s -L61.85 MB
15/bin/sh -c cp $GALAXY_HOME/.bashrc ~/1.7 KB
16/bin/sh -c mkdir $GALAXY_ROOT 31.03 MB
17ADD file ... in /etc/galaxy/reports_wsgi.ini 1.51 KB
18ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml 464 B
19ADD dir:e510ba5b4201578ac96944197f6329776429cdedb9a8b9fdfede6623f624b3e8 in /ansible/roles 49.35 KB
20ADD file ... in /ansible/provision.yml 240 B
21ADD file ... in /ansible/postgresql_provision.yml 360 B
22/bin/sh -c apt update -qq49.54 MB
23ADD file ... in /usr/local/bin/setup_postgresql.py 1.3 KB
24/bin/sh -c mkdir -p /shed_tools241.53 MB
25/bin/sh -c touch /var/log/condor/StartLog /var/log/condor/StarterLog326 B
26USER galaxy0 B
27WORKDIR /galaxy-central0 B
28ENV GALAXY_CONFIG_JOB_WORKING_DIRECTORY=/export/galaxy-central/database/job_working_directory GALAXY_CONFIG_FILE_PATH=/export/galaxy-central/database/files GALAXY_CONFIG_NEW_FILE_PATH=/export/galaxy-central/database/files0 B
29ADD file ... in /etc/galaxy/web/welcome_image.png 49.55 KB
30ADD file ... in /etc/galaxy/web/welcome.html 1.07 KB
31/bin/sh -c rm /galaxy-central/lib/galaxy/web/framework/static/toolshed/src192 B
32USER root0 B
33ADD file ... in /home/galaxy/tool_sheds_conf.xml 353 B
34ADD file ... in /usr/bin/install-tools 821 B
35ADD file ... in /usr/bin/install-biojs 342 B
36/bin/sh -c chmod +x /usr/bin/install-tools6.26 KB
37/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >232 B
38ADD 11c0b0c43c7c51af4e3d83ce690cf81fa725f41177fe930411b5abe7822fba28 in /sbin/tini 9.29 KB
39/bin/sh -c chmod +x /sbin/tini9.29 KB
40ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
41EXPOSE :210 B
42EXPOSE :800 B
43EXPOSE :4430 B
44EXPOSE :88000 B
45EXPOSE :90020 B
46VOLUME [/export/ /data/ /var/lib/docker]0 B
47ADD file ... in /usr/bin/install_db.sh 265 B
48ADD file ... in /usr/bin/startup 5.65 KB
49ENV SUPERVISOR_POSTGRES_AUTOSTART=True SUPERVISOR_MANAGE_POSTGRES=True SUPERVISOR_MANAGE_CRON=True0 B
50/bin/sh -c chmod +x /usr/bin/install_db.sh374 B
51ENTRYPOINT ["/sbin/tini" "--"]0 B
52CMD ["/usr/bin/startup"]0 B
53LABEL MAINTAINER=Matt Chambers, [email protected]0 B
54/bin/sh -c tail -n 2990 B
55ADD file ... in /galaxy-central/tools.yaml 1.67 KB
56/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1.91 GB
57ENV GALAXY_CONFIG_CONDA_AUTO_INSTALL=true0 B
58COPY multi:ed7dbfcd7ea486e96e17ba11685591d0502e019b664f435cfe56170738c060cf in /tmp/ 14.25 KB
59COPY multi:a6144a13be25141b3fb81259add7a73fe4c6727af4ce24b3ae414f4dda1f1ddd in /usr/bin/ 1.87 KB
60/bin/sh -c chmod u+x /usr/bin/*.sh1.96 KB
61ENV GALAXY_LOG=galaxy_install.log0 B
62/bin/sh -c mv /etc/galaxy/job_conf.xml /etc/galaxy/job_conf.xml.bak5.17 MB
63/bin/sh -c stat $GALAXY_ROOT/database/shed_tools/*0 B
64USER galaxy0 B
65ENV GALAXY_CONFIG_BRAND=Omicron ENABLE_TTS_INSTALL=True0 B
66WORKDIR /galaxy-central0 B
67USER root0 B
68COPY file:ac51ba823c7c9749750d21dcb2211d6b53a42adb9768c60985ae08d194f95af5 in /etc/cvmfs/keys/ 571 B
69COPY file:9549e08432861371ba60add2f9b698e9cec70609f2a0ed6389c412de7a780d8a in /etc/cvmfs/config.d/ 284 B
70COPY file:d2e3824700eda9b0ae0840f94590b2ee14fc7d1bf29ec6b692d44301e2111619 in /etc/cvmfs/ 273 B
71/bin/sh -c sed -i.bak 's/<\/tables>/19.72 KB
72VOLUME [/export/ /data/ /var/lib/docker]0 B
73EXPOSE :21 :80 :88000 B
74CMD ["/usr/bin/startup"]0 B
75/bin/sh -c echo OPTIONS=\"--force\" >>346 B
76ENV NONUSE=reports,slurmd,slurmctld SLURM_CONF=/opt/slurm/etc/slurm.conf GALAXY_CONFIG_ALLOW_USER_DATASET_PURGE=True0 B
77ADD dir:81abd3915fa5ffff0d0c30a2812f323ae5ae8dc11675d666d3508c1e662b077c in /usr/local/include/slurm/include 81.41 KB
78ADD dir:d6aedc1ec63039f9f8820299d1c9816f7803aff9d1084388721b5b18316fe87a in /usr/local/lib/slurm/lib 77.4 MB
79/bin/sh -c apt-key adv --refresh-keys6.3 MB
80ADD file ... in /etc/galaxy/job_conf.xml 1.01 KB
81ADD file ... in /usr/bin/ 456 B
82ENV DRMAA_LIBRARY_PATH=/usr/local/lib/libdrmaa.so0 B
83/bin/sh -c sed -i.bak "s/upload_store2.39 KB
84VOLUME [/export/ /data/ /var/lib/docker]0 B
85EXPOSE :21 :80 :80220 B
86CMD ["/usr/bin/startup"]0 B

Command

ADD file:08e718ed0796013f5957a1be7da3bef6225f3d82d8be0a86a7114e5caad50cbc in /