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chambm/omicron-cfncluster:release_18.05

Manifest digest

sha256:9904a841e009134d32b76d729be8f0b5413d670dfa2de914390cf1a5d36ca048

OS/ARCH

linux/amd64

Compressed size

3.17 GB

Last pushed

about 8 years by chambm

Type

Image

Manifest digest

sha256:9904a841e009134d32b76d729be8f0b5413d670dfa2de914390cf1a5d36ca048

Image Layers

Image Layers

1ADD file ... in / 69.68 MB
2/bin/sh -c set -xe &&70.95 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*630 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'853 B
5/bin/sh -c mkdir -p /run/systemd163 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Björn A. Grüning,0 B
8ENV DEBIAN_FRONTEND=noninteractive0 B
9/bin/sh -c apt-get -qq update183.22 MB
10MAINTAINER Björn A. Grüning,0 B
11ARG GALAXY_RELEASE0 B
12ARG GALAXY_REPO0 B
13ENV GALAXY_RELEASE=release_18.05 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central0 B
14ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.yml GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml0 B
15/bin/sh -c locale-gen en_US.UTF-8 &&831.21 KB
16/bin/sh -c groupadd -r postgres2.07 KB
17/bin/sh -c echo "force-unsafe-io" >189.14 MB
18/bin/sh -c groupadd -r $GALAXY_USER21.68 KB
19ADD file ... in /home/galaxy/.bashrc 1.7 KB
20/bin/sh -c mkdir $GALAXY_ROOT &&24.82 MB
21/bin/sh -c su $GALAXY_USER -c24.81 KB
22ADD file ... in /etc/galaxy/reports_wsgi.ini 1.51 KB
23ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml 466 B
24ADD dir:e4753d7855fe5c759092021fb08023a388a3bcfb015b79dd982f6cd34e1dc442 in /ansible/roles 47.53 KB
25ADD file ... in /ansible/provision.yml 221 B
26ADD file ... in /ansible/postgresql_provision.yml 351 B
27/bin/sh -c ansible-playbook /ansible/postgresql_provision.yml &&494.98 MB
28/bin/sh -c mkdir /shed_tools &&237 B
29USER [galaxy]0 B
30WORKDIR /galaxy-central0 B
31ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F30 B
32ADD file ... in /etc/galaxy/web/welcome_image.png 49.55 KB
33ADD file ... in /etc/galaxy/web/welcome.html 1.07 KB
34/bin/sh -c ./scripts/common_startup.sh && 158.69 MB
35/bin/sh -c /tool_deps/_conda/bin/conda create -y57.46 MB
36USER [root]0 B
37ADD file ... in /usr/local/bin/setup_postgresql.py 1.28 KB
38/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf7.06 MB
39ADD file ... in /home/galaxy/tool_sheds_conf.xml 354 B
40ADD file ... in /usr/bin/install-tools 765 B
41ADD file ... in /usr/bin/install-biojs 341 B
42/bin/sh -c chmod +x /usr/bin/install-tools921 B
43/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >231 B
44ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
45EXPOSE 21/tcp0 B
46EXPOSE 80/tcp0 B
47EXPOSE 443/tcp0 B
48EXPOSE 8800/tcp0 B
49EXPOSE 9002/tcp0 B
50VOLUME [/export/ /data/ /var/lib/docker]0 B
51ADD file ... in /usr/bin/install_db.sh 268 B
52/bin/sh -c chmod +x /usr/bin/install_db.sh372 B
53CMD ["/usr/bin/startup"]0 B
54MAINTAINER Matt Chambers, [email protected]0 B
55/bin/sh -c tail -n 2973 B
56ADD file ... in /galaxy-central/tools.yaml 1.67 KB
57/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1.68 GB
58ENV GALAXY_CONFIG_CONDA_AUTO_INSTALL=true0 B
59ADD file ... in /galaxy-central/tools.yaml 1.24 KB
60/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&224.7 MB
61/bin/sh -c cp /tool_deps/_conda/pkgs/bcftools-1.4.1-0/bin/* /usr/bin2.17 MB
62COPY multi:ed7dbfcd7ea486e96e17ba11685591d0502e019b664f435cfe56170738c060cf in /tmp/ 14.3 KB
63COPY multi:32699a814021bf58b5dc95376c8f8e7feb622ee16407c9a4fc0900a064a3bc83 in /tmp/ 94.1 MB
64COPY multi:f6b805533531711b1e6feb09e0ab6107409ecd96a3cf003ae13615198e8ed935 in /usr/bin/ 2 KB
65/bin/sh -c chmod u+x /usr/bin/*.sh4.04 KB
66ENV GALAXY_LOG=galaxy_install.log0 B
67/bin/sh -c mv /etc/galaxy/job_conf.xml /etc/galaxy/job_conf.xml.bak406.1 KB
68/bin/sh -c stat $GALAXY_ROOT/../shed_tools/*0 B
69USER galaxy0 B
70ENV GALAXY_CONFIG_BRAND=Omicron ENABLE_TTS_INSTALL=True0 B
71WORKDIR /galaxy-central0 B
72USER root0 B
73COPY file:ac51ba823c7c9749750d21dcb2211d6b53a42adb9768c60985ae08d194f95af5 in /etc/cvmfs/keys/ 557 B
74COPY file:9549e08432861371ba60add2f9b698e9cec70609f2a0ed6389c412de7a780d8a in /etc/cvmfs/config.d/ 270 B
75COPY file:d2e3824700eda9b0ae0840f94590b2ee14fc7d1bf29ec6b692d44301e2111619 in /etc/cvmfs/ 270 B
76/bin/sh -c sed -i.bak 's/<\/tables>/19.64 KB
77VOLUME [/export/ /data/ /var/lib/docker]0 B
78EXPOSE :21 :80 :88000 B
79CMD ["/usr/bin/startup"]0 B
80MAINTAINER Matt Chambers, [email protected]0 B
81/bin/sh -c apt-key adv --keyserver23.09 MB
82ENV NONUSE=reports,slurmd,slurmctld SLURM_CONF=/opt/slurm/etc/slurm.conf GALAXY_CONFIG_ALLOW_USER_DATASET_PURGE=True0 B
83/bin/sh -c mkdir /src &&814.87 KB
84ADD file ... in /etc/galaxy/job_conf.xml 767 B
85ADD file ... in /usr/bin/ 449 B
86ENV DRMAA_LIBRARY_PATH=/usr/local/lib/libdrmaa.so0 B
87/bin/sh -c sed -i.bak "s/upload_store2.57 KB
88VOLUME [/export/ /data/ /var/lib/docker]0 B
89EXPOSE :21 :80 :80220 B
90CMD ["/usr/bin/startup"]0 B

Command

ADD file:6eca4ad395f3f9986f9edf8cc1cc454f7247e63f18bdd8bdb914537ef55b9c88 in /