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chambm/omicron-cfncluster:release_17.09

Manifest digest

sha256:a400077d77b52e33ad1368b0816a69ce36bc1df9f4da6bdc8057b1d29e69cb19

OS/ARCH

linux/amd64

Compressed size

2.08 GB

Last pushed

almost 9 years by chambm

Type

Image

Manifest digest

sha256:a400077d77b52e33ad1368b0816a69ce36bc1df9f4da6bdc8057b1d29e69cb19

Image Layers

Image Layers

1ADD file ... in / 64.01 MB
2/bin/sh -c set -xe &&70.95 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*364 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'852 B
5/bin/sh -c mkdir -p /run/systemd162 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Björn A. Grüning,0 B
8ENV DEBIAN_FRONTEND=noninteractive0 B
9/bin/sh -c apt-get -qq update185.21 MB
10MAINTAINER Björn A. Grüning,0 B
11ARG GALAXY_RELEASE0 B
12ARG GALAXY_REPO0 B
13ENV GALAXY_RELEASE=release_17.09 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central0 B
14ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.ini GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml0 B
15/bin/sh -c locale-gen en_US.UTF-8 &&831.2 KB
16/bin/sh -c groupadd -r postgres2.08 KB
17/bin/sh -c echo "force-unsafe-io" >184.38 MB
18/bin/sh -c groupadd -r $GALAXY_USER21.69 KB
19ADD file ... in /home/galaxy/.bashrc 1.71 KB
20/bin/sh -c mkdir $GALAXY_ROOT &&30.7 MB
21/bin/sh -c su $GALAXY_USER -c22.58 KB
22ADD file ... in /etc/galaxy/reports_wsgi.ini 1.51 KB
23ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml 463 B
24ADD dir:6fc1f14e97bd5dd1711d36878fe83916bd8f06d20f16013663d3c071fa0ccc27 in /ansible/roles 46.46 KB
25ADD file ... in /ansible/provision.yml 221 B
26ADD file ... in /ansible/postgresql_provision.yml 351 B
27/bin/sh -c ansible-playbook /ansible/postgresql_provision.yml &&110.91 MB
28/bin/sh -c mkdir /shed_tools &&238 B
29USER [galaxy]0 B
30WORKDIR /galaxy-central0 B
31ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F30 B
32ADD file ... in /etc/galaxy/web/welcome_image.png 49.55 KB
33ADD file ... in /etc/galaxy/web/welcome.html 1.06 KB
34/bin/sh -c ./scripts/common_startup.sh && 48.69 MB
35USER [root]0 B
36ADD file ... in /usr/local/bin/setup_postgresql.py 1.28 KB
37/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf7.15 MB
38ADD file ... in /home/galaxy/tool_sheds_conf.xml 356 B
39ADD file ... in /usr/bin/install-tools 908 B
40ADD file ... in /usr/bin/install-biojs 340 B
41/bin/sh -c chmod +x /usr/bin/install-tools1.04 KB
42/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >230 B
43ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
44EXPOSE 21/tcp0 B
45EXPOSE 80/tcp0 B
46EXPOSE 443/tcp0 B
47EXPOSE 8800/tcp0 B
48EXPOSE 9002/tcp0 B
49VOLUME [/export/ /data/ /var/lib/docker]0 B
50ADD file ... in /usr/bin/install_db.sh 269 B
51/bin/sh -c chmod +x /usr/bin/install_db.sh373 B
52CMD ["/usr/bin/startup"]0 B
53MAINTAINER Matt Chambers, [email protected]0 B
54COPY multi:1b549463cc4463e7e7d4e053a507c407b1277bb1d08bea924d5bd84acf0a01a7 in /usr/bin/ 1.99 KB
55/bin/sh -c chmod u+x /usr/bin/*.sh4.82 KB
56ADD file ... in /galaxy-central/tools.yaml 1.66 KB
57/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1.09 GB
58ENV GALAXY_CONFIG_CONDA_AUTO_INSTALL=true0 B
59ADD file ... in /galaxy-central/tools.yaml 1.17 KB
60/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&255.16 MB
61/bin/sh -c cp /tool_deps/_conda/pkgs/bcftools-1.4.1-0/bin/* /usr/bin2.17 MB
62COPY multi:cecbb92e570f0c4ef3282392d6cae20326f21ebc56f13b9b65331ea3cd2c1b61 in /tmp/ 13.16 KB
63COPY multi:32699a814021bf58b5dc95376c8f8e7feb622ee16407c9a4fc0900a064a3bc83 in /tmp/ 94.1 MB
64/bin/sh -c mv /etc/galaxy/job_conf.xml /etc/galaxy/job_conf.xml.bak360.06 KB
65/bin/sh -c stat $GALAXY_ROOT/../shed_tools/*0 B
66USER [galaxy]0 B
67ENV GALAXY_CONFIG_BRAND=Omicron ENABLE_TTS_INSTALL=True0 B
68WORKDIR /galaxy-central0 B
69USER [root]0 B
70COPY file:ac51ba823c7c9749750d21dcb2211d6b53a42adb9768c60985ae08d194f95af5 in /etc/cvmfs/keys/ 558 B
71COPY file:9549e08432861371ba60add2f9b698e9cec70609f2a0ed6389c412de7a780d8a in /etc/cvmfs/config.d/ 270 B
72COPY file:d2e3824700eda9b0ae0840f94590b2ee14fc7d1bf29ec6b692d44301e2111619 in /etc/cvmfs/ 270 B
73/bin/sh -c sed -i.bak 's/<\/tables>/19.61 KB
74VOLUME [/export/ /data/ /var/lib/docker]0 B
75EXPOSE 21/tcp 80/tcp 8800/tcp0 B
76CMD ["/usr/bin/startup"]0 B
77MAINTAINER Matt Chambers, [email protected]0 B
78/bin/sh -c apt-key adv --keyserver23.12 MB
79ENV NONUSE=reports,slurmd,slurmctld SLURM_CONF=/opt/slurm/etc/slurm.conf GALAXY_CONFIG_ALLOW_USER_DATASET_PURGE=True0 B
80/bin/sh -c mkdir /src &&814.87 KB
81ADD file ... in /etc/galaxy/job_conf.xml 767 B
82ADD file ... in /usr/bin/ 452 B
83ENV DRMAA_LIBRARY_PATH=/usr/local/lib/libdrmaa.so0 B
84/bin/sh -c sed -i.bak "s/upload_store2.59 KB
85VOLUME [/export/ /data/ /var/lib/docker]0 B
86EXPOSE 21/tcp 80/tcp 8022/tcp0 B
87CMD ["/usr/bin/startup"]0 B

Command

ADD file:8f997234193c2f587ac17bb4a8db2657103d2924813edb281eec7ba9883a2806 in /