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chambm/omicron-cfncluster:release_17.05

Manifest digest

sha256:1e42d4b2bb950b767fa42ab4573f1a55bf47d145157a779be2e2d5c5f29a6f8f

OS/ARCH

linux/amd64

Compressed size

1.64 GB

Last pushed

almost 9 years by chambm

Type

Image

Manifest digest

sha256:1e42d4b2bb950b767fa42ab4573f1a55bf47d145157a779be2e2d5c5f29a6f8f

Image Layers

Image Layers

1ADD file ... in / 63.99 MB
2/bin/sh -c set -xe &&70.92 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*364 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'675 B
5/bin/sh -c mkdir -p /run/systemd162 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Björn A. Grüning,0 B
8ENV DEBIAN_FRONTEND=noninteractive0 B
9/bin/sh -c apt-get -qq update182.98 MB
10MAINTAINER Björn A. Grüning, [email protected]0 B
11ARG GALAXY_RELEASE0 B
12ARG GALAXY_REPO0 B
13ENV GALAXY_RELEASE=release_17.05 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central GALAXY_CONFIG_DIR=/etc/galaxy0 B
14ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.ini GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml GALAXY_CONFIG_TOOL_DEPENDENCY_DIR=/export/tool_deps0 B
15/bin/sh -c locale-gen en_US.UTF-8 &&408.82 KB
16/bin/sh -c groupadd -r postgres2.05 KB
17/bin/sh -c echo "force-unsafe-io" >211.89 MB
18/bin/sh -c groupadd -r $GALAXY_USER21.58 KB
19ADD file ... in /home/galaxy/.bashrc1.71 KB
20/bin/sh -c mkdir $GALAXY_ROOT &&29.97 MB
21/bin/sh -c su $GALAXY_USER -c21.93 KB
22ADD file ... in /etc/galaxy/reports_wsgi.ini1.51 KB
23ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml438 B
24ADD dir:f9a227e57f621e44acb15dce5ee3a11b8394602f8a8bcf4bab1c02565c68144b in /ansible/roles42.11 KB
25ADD file ... in /ansible/provision.yml220 B
26ADD file ... in /ansible/postgresql_provision.yml350 B
27/bin/sh -c ansible-playbook /ansible/postgresql_provision.yml &&64.42 MB
28/bin/sh -c mkdir /shed_tools &&182 B
29USER [galaxy]0 B
30WORKDIR /galaxy-central0 B
31ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F3 GALAXY_CONFIG_BRAND=Galaxy0 B
32ADD file ... in /etc/galaxy/web/welcome_image.png49.55 KB
33ADD file ... in /etc/galaxy/web/welcome.html1.06 KB
34/bin/sh -c ./scripts/common_startup.sh && 42.84 MB
35USER [root]0 B
36ADD file ... in /usr/local/bin/setup_postgresql.py1.28 KB
37/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf7.06 MB
38ADD file ... in /home/galaxy/tool_sheds_conf.xml357 B
39ADD file ... in /usr/bin/install-tools912 B
40ADD file ... in /usr/bin/install-biojs348 B
41/bin/sh -c chmod +x /usr/bin/install-tools1.04 KB
42/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >231 B
43ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
44EXPOSE 21/tcp0 B
45EXPOSE 80/tcp0 B
46EXPOSE 443/tcp0 B
47EXPOSE 8800/tcp0 B
48EXPOSE 9002/tcp0 B
49VOLUME [/export/ /data/ /var/lib/docker]0 B
50ADD file ... in /usr/bin/install_db.sh271 B
51/bin/sh -c chmod +x /usr/bin/install_db.sh332 B
52CMD ["/usr/bin/startup"]0 B
53MAINTAINER Matt Chambers, [email protected]0 B
54COPY multi:1b549463cc4463e7e7d4e053a507c407b1277bb1d08bea924d5bd84acf0a01a7 in /usr/bin/ 1.99 KB
55/bin/sh -c chmod u+x /usr/bin/*.sh4.83 KB
56ADD file ... in /galaxy-central/tools.yaml 1.79 KB
57/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1017.09 MB
58COPY multi:8df00656c0cac987b1f580a36cac177515786436eeaddeff5a6bce9819b1d986 in /tmp/ 11.67 KB
59COPY multi:0515b237f7543b6cd8df8c74288e2b4b310e0cd27f1a74c8dde9c9b2e18b1024 in /tmp/ 1.81 MB
60/bin/sh -c mv /etc/galaxy/job_conf.xml /etc/galaxy/job_conf.xml.bak470.83 KB
61/bin/sh -c stat $GALAXY_ROOT/../shed_tools/*0 B
62USER [galaxy]0 B
63ENV GALAXY_CONFIG_BRAND=Omicron ENABLE_TTS_INSTALL=True0 B
64WORKDIR /galaxy-central0 B
65USER [root]0 B
66COPY file:fb178959c39e11d1a94aaedb58fba74c702c9dac4b211f1a342c1e3f02988850 in . 272 B
67/bin/sh -c pip install ansible29.48 MB
68COPY file:ac51ba823c7c9749750d21dcb2211d6b53a42adb9768c60985ae08d194f95af5 in /etc/cvmfs/keys/ 557 B
69COPY file:9549e08432861371ba60add2f9b698e9cec70609f2a0ed6389c412de7a780d8a in /etc/cvmfs/config.d/ 270 B
70COPY file:d2e3824700eda9b0ae0840f94590b2ee14fc7d1bf29ec6b692d44301e2111619 in /etc/cvmfs/ 269 B
71/bin/sh -c sed -i.bak 's/<\/tables>/18.64 KB
72VOLUME [/export/ /data/ /var/lib/docker]0 B
73EXPOSE 21/tcp 80/tcp 8800/tcp0 B
74CMD ["/usr/bin/startup"]0 B
75MAINTAINER Matt Chambers, [email protected]0 B
76/bin/sh -c apt-key adv --keyserver23.24 MB
77ENV NONUSE=reports,slurmd,slurmctld SLURM_CONF=/opt/slurm/etc/slurm.conf GALAXY_CONFIG_ALLOW_USER_DATASET_PURGE=True0 B
78/bin/sh -c mkdir /src &&814.87 KB
79ADD file ... in /etc/galaxy/job_conf.xml 766 B
80ADD file ... in /usr/bin/ 450 B
81ENV DRMAA_LIBRARY_PATH=/usr/local/lib/libdrmaa.so0 B
82/bin/sh -c sed -i.bak "s/upload_store2.47 KB
83VOLUME [/export/ /data/ /var/lib/docker]0 B
84EXPOSE 21/tcp 80/tcp 8022/tcp0 B
85CMD ["/usr/bin/startup"]0 B

Command

ADD file:352ee0cc1cc352d862c55cade419e2e7b64a63c663b896d8014efdf44008bce4 in /