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bryce911/rqc-pipeline:20240507

Manifest digest

sha256:be779367e659c3ef774a5da03cca43e1afcc876fbb3b5e0b393c65cf488422ea

OS/ARCH

linux/amd64

Compressed size

3.74 GB

Last pushed

over 2 years by bryce911

Type

Image

Manifest digest

sha256:be779367e659c3ef774a5da03cca43e1afcc876fbb3b5e0b393c65cf488422ea

Image Layers

Image Layers

1ADD file ... in / 61.37 MB
2CMD ["/bin/bash"]0 B
3MAINTAINER Bryce Foster <[email protected]>0 B
4ARG BBV=39.050 B
5ENV BBV=39.060 B
6ARG SAMV=1.180 B
7ENV SAMV=1.180 B
8ARG SAMBAMBAV=0.8.10 B
9ENV SAMBAMBAV=0.8.10 B
10RUN |3 BBV=39.06 SAMV=1.18 SAMBAMBAV=0.8.164.39 MB
11RUN |3 BBV=39.06 SAMV=1.18 SAMBAMBAV=0.8.111.97 MB
12ADD ./jdk-21_linux-x64_bin.rpm . # buildkit186.68 MB
13RUN |3 BBV=39.06 SAMV=1.18 SAMBAMBAV=0.8.1192.12 MB
14RUN |3 BBV=39.06 SAMV=1.18 SAMBAMBAV=0.8.113.16 MB
15RUN |3 BBV=39.06 SAMV=1.18 SAMBAMBAV=0.8.11.66 MB
16ENV BBTOOLS_VERSION=39.060 B
17ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/bin/:/bbmap/0 B
18ENV SAMTOOLS_VERSION=1.180 B
19RUN |3 BBV=39.06 SAMV=1.18 SAMBAMBAV=0.8.1128 B
20MAINTAINER Bryce Foster <[email protected]>0 B
21ARG BLASTV=2.15.00 B
22RUN |1 BLASTV=2.15.0 /bin/sh -c55.3 MB
23ADD ./jgi-rqc-pipeline /jgi-rqc-pipeline/ # buildkit53.29 MB
24ADD ./Miniconda3-latest-Linux-x86_64.sh Miniconda3.sh # buildkit72.91 MB
25RUN |1 BLASTV=2.15.0 /bin/sh -c1012.7 MB
26RUN |1 BLASTV=2.15.0 /bin/sh -c255.5 MB
27ADD ./smrtlink-12.0.0.177059.bryce.tar.gz /smrtlink/ # buildkit1.8 GB
28ENV LANG=en_US.UTF-80 B
29ENV LANGUAGE=en_US:en0 B
30ENV LC_ALL=en_US.UTF-80 B
31ENV PATH=/rqc-env/bin:/ncbi-blast-2.15.0+/bin:/minimap2://usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/bin/:/bbmap/0 B
32ENV RQC_ENV=docker0 B

Command

ADD file:15bcbe5a5621a2fc959a18c325c14ece68e6868a1e3e91ec3ed9260fed5a357b in /