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broadinstitute/gtex_rnaseq:V10

Manifest digest

sha256:d29c0962bbcf3a366bb151264dc794caa1575ca97614ac0f9e87fc96a5a562fc

OS/ARCH

linux/amd64

Compressed size

1.2 GB

Last pushed

over 1 year by francois4

Type

Image

Manifest digest

sha256:d29c0962bbcf3a366bb151264dc794caa1575ca97614ac0f9e87fc96a5a562fc

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.16 MB
6CMD ["/bin/bash"]0 B
7MAINTAINER Francois Aguet0 B
8RUN /bin/sh -c apt-get update492.7 MB
9RUN /bin/sh -c cd /opt17.04 MB
10RUN /bin/sh -c cd /opt11.59 MB
11RUN /bin/sh -c cd /opt11.89 MB
12ENV PATH=/opt/STAR-2.7.10a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13RUN /bin/sh -c cd /opt22.01 MB
14ENV PATH=/opt/RSEM-1.3.3:/opt/STAR-2.7.10a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
15RUN /bin/sh -c cd /opt1.63 MB
16ENV LD_LIBRARY_PATH=/usr/local/lib/bamtools:0 B
17COPY bamsync /opt/bamsync # buildkit14.82 KB
18RUN /bin/sh -c cd /opt/bamsync46.13 KB
19ENV PATH=/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.10a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
20RUN /bin/sh -c mkdir /opt/picard-tools15.32 MB
21RUN /bin/sh -c cd /opt4.48 MB
22ENV PATH=/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.10a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/kallisto_linux-v0.50.10 B
23RUN /bin/sh -c cd /opt33.23 MB
24RUN /bin/sh -c mkdir /opt/ucsc6.89 MB
25ENV PATH=/opt/ucsc:/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.10a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/kallisto_linux-v0.50.10 B
26RUN /bin/sh -c pip3 install8.12 MB
27RUN /bin/sh -c pip3 install296.89 MB
28RUN /bin/sh -c pip3 install381.1 KB
29RUN /bin/sh -c cd /opt19.39 MB
30ENV PATH=/opt/FastQC-0.11.9:/opt/ucsc:/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.10a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/kallisto_linux-v0.50.10 B
31RUN /bin/sh -c mkdir /opt/rnaseqc3.3 MB
32RUN /bin/sh -c pip3 install18.77 MB
33ENV PATH=/opt/rnaseqc:/opt/FastQC-0.11.9:/opt/ucsc:/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.10a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/kallisto_linux-v0.50.10 B
34RUN /bin/sh -c apt-get update42.17 MB
35RUN /bin/sh -c echo "deb196.03 MB
36RUN /bin/sh -c pip3 install193.35 KB
37COPY rnaseqc /opt/rnaseqc/ # buildkit1.9 MB
38COPY src src/ # buildkit27.93 KB

Command

 ARG RELEASE