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broadinstitute/gatk:4.2.1.0

Manifest digest

sha256:0359ae4f32f2f541ca86a8cd30ef730bbaf8c306b9d53d2d520262d3e84b3b2b

OS/ARCH

linux/amd64

Compressed size

1.73 GB

Last pushed

about 5 years by droazen

Type

Image

Manifest digest

sha256:0359ae4f32f2f541ca86a8cd30ef730bbaf8c306b9d53d2d520262d3e84b3b2b

Image Layers

Image Layers

1ADD file ... in / 25.46 MB
2/bin/sh -c [ -z "$(apt-get34.54 KB
3/bin/sh -c set -xe &&852 B
4/bin/sh -c mkdir -p /run/systemd163 B
5CMD ["/bin/bash"]0 B
6/bin/sh -c apt-get update &&0 B
7/bin/sh -c export CLOUD_SDK_REPO="cloud-sdk-$(lsb_release -c0 B
8ENV HOME=/root0 B
9WORKDIR /root0 B
10CMD ["bash"]0 B
11ENV JAVA_LIBRARY_PATH=/usr/lib/jni0 B
12ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/0 B
13/bin/sh -c java -version0 B
14ENV DOWNLOAD_DIR=/downloads0 B
15ENV CONDA_URL=https://repo.continuum.io/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh0 B
16ENV CONDA_MD5== 81c773ff87af5cfac79ab862942ab6b30 B
17ENV CONDA_PATH=/opt/miniconda0 B
18/bin/sh -c mkdir $DOWNLOAD_DIR &&0 B
19/bin/sh -c rm -rf /var/lib/apt/lists/*0 B
20424.34 MB
21WORKDIR /gatk0 B
22COPY dir:1ecb184d9458cad2b3d284e052c44169c00d897e7332e8a5a5765396bd3d86fd in . 0 B
23/bin/sh -c ln -s $(0 B
24/bin/sh -c ln -s $(0 B
25/bin/sh -c ln -s $(0 B
26WORKDIR /root0 B
27/bin/sh -c java -jar gatk.jar0 B
28/bin/sh -c mkdir /gatkCloneMountPoint0 B
29/bin/sh -c mkdir /jars0 B
30/bin/sh -c mkdir .gradle0 B
31WORKDIR /gatk0 B
32ENV CI=true0 B
33/bin/sh -c echo "source activate0 B
34WORKDIR /root0 B
35/bin/sh -c cp -r /root/run_unit_tests.sh0 B
36/bin/sh -c cp -r gatk.jar0 B
37ENV CLASSPATH=/gatk/gatk.jar:0 B
38WORKDIR /gatk0 B
39/bin/sh -c chmod -R a+rw0 B
40ENV PATH=/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
41/bin/sh -c conda env create0 B
42CMD ["bash" "--init-file" "/gatk/gatkenv.rc"]0 B
43ENV PATH=/gatk:/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
441.29 GB

Command

ADD file:91a750fb184711fde03c9172f41e8a907ccbb1bfb904c2c3f4ef595fcddbc3a9 in /