broadinstitute/dig-loam:ensemblvep

Manifest digest

sha256:c1f87b6e852a8cb843484dfcb4a4131e6368920d8153e0bbda9dc92cbfaf7eda

OS/ARCH

linux/amd64

Compressed size

341.25 MB

Last pushed

almost 5 years by ryankbroad

Type

Image

Manifest digest

sha256:c1f87b6e852a8cb843484dfcb4a4131e6368920d8153e0bbda9dc92cbfaf7eda

Image Layers

Image Layers

1ADD file ... in / 25.47 MB

2CMD ["bash"]0 B

3/bin/sh -c apt-get update &&99.87 MB

4ENV OPT=/opt/vep0 B

5ENV OPT_SRC=/opt/vep/src0 B

6ENV PERL5LIB_TMP=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B

7ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/opt/vep/src/bioperl-live0 B

8ENV KENT_SRC=/opt/vep/src/kent-335_base/src0 B

9ENV HTSLIB_DIR=/opt/vep/src/htslib0 B

10ENV MACHTYPE=x86_640 B

11ENV DEPS=/opt/vep/src0 B

12ENV PATH=/opt/vep/src/ensembl-vep:/opt/vep/src/var_c_code:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

13ENV LANG_VAR=en_US.UTF-80 B

14/bin/sh -c useradd -r -m4.32 KB

15USER vep0 B

16COPY --chown=vep:vepdir:022b7b8af9127c631f48f0623170c678932a58a803ef508e35a0f50885ede6ac in /opt/vep/src 106.68 MB

17USER root0 B

18WORKDIR /opt/vep/src/bioperl-ext/Bio/Ext/Align/0 B

19/bin/sh -c perl Makefile.PL &&1.15 MB

20WORKDIR /opt/vep/src/ensembl-xs0 B

21/bin/sh -c perl Makefile.PL &&443.2 KB

22WORKDIR /opt/vep/src0 B

23/bin/sh -c ensembl-vep/travisci/build_c.sh && 53.88 MB

24ENV LC_ALL=en_US.UTF-80 B

25ENV LANG=en_US.UTF-80 B

26USER vep0 B

27ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B

28WORKDIR /opt/vep/src/ensembl-vep0 B

29/bin/sh -c echo >> $OPT/.profile4.12 MB

30USER root0 B

31/bin/sh -c apt-get update &&19.25 MB

32WORKDIR /opt/samtools115 B

33/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.10/samtools-1.10.tar.bz2 &&27.32 MB

34WORKDIR /opt0 B

35/bin/sh -c git clone https://github.com/konradjk/loftee.git3.06 MB

36ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/usr/local/bin/loftee0 B

37USER vep0 B

Command

ADD file:0d82cd095966e8ee78b593cb47a352eec842edb7bd9d9468e8a70154522447d1 in /