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biodckrdev/sga:0.10.13

Manifest digest

sha256:11780e71350c1532b9acf5c88cb1942cd06f68a4b5d2452fdaae7965cb337941

OS/ARCH

linux/amd64

Compressed size

433.35 MB

Last pushed

about 10 years by biodckrdev

Type

Image

Manifest digest

sha256:11780e71350c1532b9acf5c88cb1942cd06f68a4b5d2452fdaae7965cb337941

Image Layers

Image Layers

1ADD file ... in /47.43 MB
2/bin/sh -c set -xe &&823 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*446 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'678 B
5/bin/sh -c mkdir -p /run/systemd160 B
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8/bin/sh -c mv /etc/apt/sources.list /etc/apt/sources.list.bkp777 B
9/bin/sh -c apt-get clean all241.25 MB
10/bin/sh -c echo 'export PATH=/opt/conda/bin:$PATH'30.8 MB
11/bin/sh -c TINI_VERSION=`curl https://github.com/krallin/tini/releases/latest |457.23 KB
12/bin/sh -c mkdir /data /config111 B
13/bin/sh -c groupadd fuse &&4.53 KB
14/bin/sh -c chmod 777 -R58.81 MB
15USER [biodocker]0 B
16ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin0 B
17ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/home/biodocker/bin0 B
18ENV HOME=/home/biodocker0 B
19/bin/sh -c mkdir /home/biodocker/bin146 B
20/bin/sh -c conda config --add7.13 KB
21/bin/sh -c conda config --add201 B
22/bin/sh -c conda upgrade conda36.17 MB
23VOLUME [/data /config]0 B
24CMD ["/bin/bash"]0 B
25WORKDIR /data0 B
26MAINTAINER Felipe da Veiga0 B
27USER [root]0 B
28ENV ZIP=sparsehash-2.0.2.tar.gz0 B
29ENV URL=https://github.com/sparsehash/sparsehash/archive0 B
30ENV FOLDER=sparsehash-sparsehash-2.0.20 B
31ENV DST=/tmp0 B
32/bin/sh -c wget $URL/$ZIP -O123.36 KB
33ENV ZIP=jemalloc-4.0.2.tar.bz20 B
34ENV URL=https://github.com/jemalloc/jemalloc/releases/download/4.0.2/0 B
35ENV FOLDER=jemalloc-4.0.20 B
36ENV DST=/tmp0 B
37/bin/sh -c wget $URL/$ZIP -O6.62 MB
38/bin/sh -c pip install pysam==0.8.38.75 MB
39ENV ZIP=v2.4.0.tar.gz0 B
40ENV URL=https://github.com/pezmaster31/bamtools/archive/0 B
41ENV FOLDER=bamtools-2.4.00 B
42ENV DST=/tmp0 B
43/bin/sh -c wget $URL/$ZIP -O1.67 MB
44ENV ZIP=v0.10.13.tar.gz0 B
45ENV URL=https://github.com/jts/sga/archive0 B
46ENV FOLDER=sga-0.10.130 B
47ENV DST=/tmp0 B
48/bin/sh -c wget $URL/$ZIP -O1.28 MB
49USER [biodocker]0 B
50WORKDIR /data0 B
51CMD ["sga"]0 B
52MAINTAINER Saulo Alves Aflitos0 B

Command

ADD file:902bff94e00fb3d9ebb11dc5000a0f0f2400885c56f4fbfb00de394534e282f7 in /