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biodckrdev/gatk:3.4

Manifest digest

sha256:8c80dedf2d56e4751dd86da67e81c669f0fdafd0ac43adbd042c154dbd6c2785

OS/ARCH

linux/amd64

Compressed size

1018.9 MB

Last pushed

about 10 years by biodckrdev

Type

Image

Manifest digest

sha256:8c80dedf2d56e4751dd86da67e81c669f0fdafd0ac43adbd042c154dbd6c2785

Image Layers

Image Layers

1ADD file ... in /48.97 MB
2CMD ["/bin/bash"]0 B
3/bin/sh -c apt-get update &&17.69 MB
4/bin/sh -c apt-get update &&40.56 MB
5/bin/sh -c apt-get update &&607.68 KB
6ENV LANG=C.UTF-80 B
7/bin/sh -c { echo '#!/bin/sh';242 B
8ENV JAVA_HOME=/usr/lib/jvm/java-7-openjdk-amd640 B
9ENV JAVA_VERSION=7u1010 B
10ENV JAVA_DEBIAN_VERSION=7u101-2.6.6-2~deb8u10 B
11/bin/sh -c set -x &&132.85 MB
12ENV DEBIAN_FRONTEND=noninteractive0 B
13USER [root]0 B
14/bin/sh -c apt-get update -qq124.92 MB
15ENV ZIP=samtools-1.2.tar.bz20 B
16ENV URL=https://github.com/BioDocker/software-archive/releases/download/samtools0 B
17ENV FOLDER=samtools-1.20 B
18ENV DST=/tmp0 B
19/bin/sh -c wget $URL/$ZIP -O1.23 MB
20/bin/sh -c useradd --create-home --shell4.36 KB
21USER [biodocker]0 B
22/bin/sh -c mkdir -p /home/biodocker/bin145 B
23ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/biodocker/bin0 B
24ENV HOME=/home/biodocker0 B
25ENV ZIP=bwakit-0.7.12_x64-linux.tar.bz20 B
26ENV URL=https://github.com/BioDocker/software-archive/releases/download/bwa0 B
27ENV FOLDER=bwa.kit0 B
28ENV DST=/home/biodocker/bin0 B
29/bin/sh -c wget $URL/$ZIP -O44.93 MB
30ENV ZIP=picard-tools-1.139.zip0 B
31ENV URL=https://github.com/broadinstitute/picard/releases/download/1.139/0 B
32ENV FOLDER=picard-tools-1.1390 B
33ENV DST=/home/biodocker/bin/0 B
34/bin/sh -c wget $URL/$ZIP -O7.18 MB
35ENV SHA=f19618653a0d23baaf147efe7f14aeb4eeb0cbb80 B
36ENV DST=/home/biodocker/bin0 B
37ENV FOLDER=gatk0 B
38/bin/sh -c git clone https://github.com/broadgsa/gatk-protected.git599.97 MB
39ENV PATH=/usr/lib/jvm/java-7-openjdk-amd64/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/biodocker/bin0 B
40VOLUME [/data /config]0 B
41CMD ["GenomeAnalysisTK"]0 B
42MAINTAINER Saulo Alves Aflitos <[email protected]>0 B

Command

ADD file:76679eeb94129df23c99013487d6b6bd779d2107bf07d194a524fdbb6a961530 in /