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biocontainers/rsat:20240828_cv1

Manifest digest

sha256:439efc3dcf73fee51f1e8423575d0a23c2ee99e76dea518d9e24954fd8b7a7bf

OS/ARCH

linux/amd64

Compressed size

4.11 GB

Last pushed

about 2 years by biocontainersci

Type

Image

Manifest digest

sha256:439efc3dcf73fee51f1e8423575d0a23c2ee99e76dea518d9e24954fd8b7a7bf

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=20.040 B
5ADD file ... in / 26.24 MB
6CMD ["/bin/bash"]0 B
7LABEL base_image=ubuntu:focal0 B
8LABEL version=10 B
9LABEL about.summary=Tools to analyse0 B
10LABEL software=rsat0 B
11LABEL software.version=202408280 B
12LABEL about.tags=implemented-in::perl,R,python,C0 B
13LABEL about.home=http://rsat.eu0 B
14LABEL extra.identifiers.biotools=rsat0 B
15LABEL about.software=https://github.com/rsa-tools/rsat-code0 B
16LABEL about.documentation=https://github.com/rsa-tools0 B
17LABEL about.license=AGPL-3.0-only0 B
18LABEL about.license_file=see also licenses0 B
19LABEL [email protected]0 B
20MAINTAINER "[email protected]"0 B
21ENV DEBIAN_FRONTEND=noninteractive0 B
22/bin/sh -c apt-get update &&41.14 MB
23ENV LANG=en_US.UTF-80 B
24ENV LANGUAGE=en_US.UTF-80 B
25ENV LC_ALL=en_US.UTF-80 B
26/bin/sh -c apt-get install -y86.72 MB
27/bin/sh -c echo "deb https://cloud.r-project.org/bin/linux/ubuntu5.36 KB
28/bin/sh -c gpg --keyserver hkp://keyserver.ubuntu.com:802.49 KB
29/bin/sh -c apt-get update &&159.68 MB
30/bin/sh -c apt-get update &&4.63 MB
31ENV INSTALL_ROOT=/packages0 B
32/bin/sh -c echo $INSTALL_ROOT &&131 B
33WORKDIR /packages0 B
34/bin/sh -c git clone https://github.com/rsa-tools/rsat-code.git745.66 MB
35/bin/sh -c mv rsat-code rsat745.66 MB
36/bin/sh -c wget --no-parent -r88.14 MB
37/bin/sh -c cd rsat/public_html/ 194 B
38/bin/sh -c rm -rf /packages/motif_databases/cisBP2164 B
39/bin/sh -c grep -v cisBP24.25 KB
40/bin/sh -c mv /packages/motif_databases/db_matrix_files.filt.tab /packages/motif_databases/db_matrix_files.tab4.28 KB
41ENV RSAT=/packages/rsat0 B
42/bin/sh -c echo $RSAT0 B
43WORKDIR /packages/rsat0 B
44ENV MY_IP=localhost0 B
45/bin/sh -c echo "MY_IP ${MY_IP}"0 B
46ENV RSAT_SITE=my_rsat0 B
47/bin/sh -c perl perl-scripts/configure_rsat.pl -auto7.49 KB
48/bin/sh -c apt-get update &&36.26 MB
49/bin/bash -c #(nop) SHELL0 B
50/bin/bash -c cd ${RSAT}0 B
51/bin/bash -c #(nop) WORKDIR /packages/rsat0 B
52/bin/bash -c source /packages/rsat/RSAT_config.bashrc &&777.92 MB
53/bin/bash -c bash installer/03_install_rsat.bash 1.05 GB
54/bin/bash -c echo "source ${RSAT}/RSAT_config.bashrc"1.23 KB
55/bin/bash -c rm -rf ${RSAT}/ext_lib/ensemblgenomes*/ensembl-*/modules/t641 B
56/bin/bash -c #(nop) ENV0 B
57/bin/bash -c #(nop) ENV0 B
58/bin/bash -c #(nop) ENV0 B
59/bin/bash -c #(nop) ENV0 B
60/bin/bash -c #(nop) ENV0 B
61/bin/bash -c useradd ${RSATUSER} &&420.61 MB
62/bin/bash -c #(nop) ENV0 B
63/bin/bash -c #(nop) ENV0 B
64/bin/bash -c #(nop) ENV0 B
65/bin/bash -c #(nop) ENV0 B
66/bin/bash -c #(nop) ENV0 B
67/bin/bash -c #(nop) ENV0 B
68/bin/bash -c #(nop) ENV0 B
69/bin/bash -c wget ${TESTRSATFILEREMOTE} -O1.13 KB
70/bin/bash -c wget ${TESTMAKEURL} -O2.25 KB
71/bin/bash -c #(nop) USER0 B
72/bin/bash -c #(nop) WORKDIR /home/rsat_user0 B

Command

 ARG RELEASE