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bids/mrtrix3_connectome:0.4.2

Manifest digest

sha256:3d701b0846038289e18e7571c7072056f1f81daa70ab3159bb48cec9d88f6ecf

OS/ARCH

linux/amd64

Compressed size

7.31 GB

Last pushed

over 7 years by lestropie

Type

Image

Manifest digest

sha256:3d701b0846038289e18e7571c7072056f1f81daa70ab3159bb48cec9d88f6ecf

Image Layers

Image Layers

1ADD file ... in / 30.68 MB
2/bin/sh -c set -xe &&843 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*509 B
4/bin/sh -c mkdir -p /run/systemd163 B
5CMD ["/bin/bash"]0 B
6MAINTAINER Robert E. Smith0 B
7/bin/sh -c apt-get update &&157.62 MB
8/bin/sh -c DEBIAN_FRONTEND=noninteractive 999.55 KB
9/bin/sh -c wget -qO- http://neuro.debian.net/lists/artful.au.full254 B
10COPY file:60a45bcbd465e28548d990224b0d8fde68ee1b0dfeb60891ab90dae6b2c8618f in /neurodebian.gpg 3.24 KB
11/bin/sh -c apt-key add /neurodebian.gpg298.6 KB
12/bin/sh -c apt-get install -y11.84 MB
13/bin/sh -c wget -qO- https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz2.45 GB
14/bin/sh -c apt-get install -y80.44 MB
15/bin/sh -c wget -q http://fsl.fmrib.ox.ac.uk/fsldownloads/fslinstaller.py21.27 KB
16/bin/sh -c /fslinstaller.py -d /opt/fsl4.46 GB
17/bin/sh -c wget -qO- "https://www.nitrc.org/frs/download.php/5994/ROBEXv12.linux64.tar.gz//?i_agree=1&download_now=1"51.49 MB
18/bin/sh -c npm install -gq19.52 MB
19/bin/sh -c apt-get clean &&759 B
20/bin/sh -c wget -qO- http://www.gin.cnrs.fr/AAL_files/aal_for_SPM12.tar.gz326.25 KB
21/bin/sh -c wget -qO- http://www.gin.cnrs.fr/AAL2_files/aal2_for_SPM12.tar.gz357.59 KB
22/bin/sh -c wget -q https://github.com/AlistairPerry/CCA/raw/master/parcellations/512inMNI.nii60.92 KB
23/bin/sh -c wget -qO- http://www.nitrc.org/frs/download.php/5906/ADHD200_parcellations.tar.gz26.18 KB
24/bin/sh -c wget -q "https://s3-eu-west-1.amazonaws.com/pfigshare-u-files/5528816/lh.HCPMMP1.annot"327.67 KB
25/bin/sh -c wget -q "https://s3-eu-west-1.amazonaws.com/pfigshare-u-files/5528819/rh.HCPMMP1.annot"329.19 KB
26ENV ANTSPATH=/usr/lib/ants0 B
27ENV PATH=/usr/lib/ants:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
28ENV PATH=/opt/freesurfer/bin:/opt/freesurfer/mni/bin:/usr/lib/ants:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
29ENV OS=Linux0 B
30ENV SUBJECTS_DIR=/opt/freesurfer/subjects0 B
31ENV FSF_OUTPUT_FORMAT=nii.gz0 B
32ENV MNI_DIR=/opt/freesurfer/mni0 B
33ENV LOCAL_DIR=/opt/freesurfer/local0 B
34ENV FREESURFER_HOME=/opt/freesurfer0 B
35ENV FSFAST_HOME=/opt/freesurfer/fsfast0 B
36ENV MINC_BIN_DIR=/opt/freesurfer/mni/bin0 B
37ENV MINC_LIB_DIR=/opt/freesurfer/mni/lib0 B
38ENV MNI_DATAPATH=/opt/freesurfer/mni/data0 B
39ENV FMRI_ANALYSIS_DIR=/opt/freesurfer/fsfast0 B
40ENV PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.50 B
41ENV MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.50 B
42/bin/sh -c echo "cHJpbnRmICJyb2JlcnQuc21pdGhAZmxvcmV5LmVkdS5hdVxuMjg1NjdcbiAqQ3FLLjFwTXY4ZE5rXG4gRlNvbGRZRXRDUFZqNlxuIiA+IC9vcHQvZnJlZXN1cmZlci9saWNlbnNlLnR4dAo=" |239 B
43ENV FSLDIR=/opt/fsl0 B
44ENV PATH=/opt/fsl/bin:/opt/freesurfer/bin:/opt/freesurfer/mni/bin:/usr/lib/ants:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
45/bin/sh -c /bin/bash -c 'source0 B
46ENV FSLMULTIFILEQUIT=TRUE0 B
47ENV FSLOUTPUTTYPE=NIFTI0 B
48/bin/sh -c rm -f $FSLDIR/bin/eddy_cuda169 B
49ENV PATH=/opt/ROBEX:/opt/fsl/bin:/opt/freesurfer/bin:/opt/freesurfer/mni/bin:/usr/lib/ants:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
50/bin/sh -c git clone https://github.com/MRtrix3/mrtrix3.git61.48 MB
51ENV PATH=/mrtrix3/bin:/opt/ROBEX:/opt/fsl/bin:/opt/freesurfer/bin:/opt/freesurfer/mni/bin:/usr/lib/ants:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
52ENV PYTHONPATH=/mrtrix3/lib:0 B
53COPY file:693a07ea0acda5993c0f7d8ee0549f60150a3759609fe2874b621b7bf3eddf64 in /mrtrix3_connectome.py 19.47 KB
54/bin/sh -c chmod 775 /mrtrix3_connectome.py19.47 KB
55COPY file:5574d9657f1ecae1877823a9c74a150c74b9c7fd2986f0f06e9cc8f0c23f0baf in /version 108 B
56ENTRYPOINT ["/mrtrix3_connectome.py"]0 B

Command

ADD file:c0f17c7189fc11b6a1d525e9fcff842b93bfaae92e5b91cb9a76aa867792756d in /