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bids/brainsuite:latest

Manifest digest

sha256:deb748ffd738b9b84fe2eb00c93d6e745c327f17b5e1c6d687a837ff54ef3060

OS/ARCH

linux/amd64

Compressed size

7.56 GB

Last pushed

about 3 years by bidsappsdev

Type

Image

Manifest digest

sha256:deb748ffd738b9b84fe2eb00c93d6e745c327f17b5e1c6d687a837ff54ef3060

Image Layers

Image Layers

1ADD file ... in / 42.1 MB
2/bin/sh -c rm -rf /var/lib/apt/lists/*525 B
3/bin/sh -c set -xe &&844 B
4/bin/sh -c mkdir -p /run/systemd168 B
5CMD ["/bin/bash"]0 B
6COPY file:13571f65925254043653f92d6054afc22eff9f28bbe1503ea31155507c240548 in /usr/local/etc/neurodebian.gpg 3.33 KB
7/bin/sh -c apt-get update &&153.87 MB
8/bin/sh -c curl -o pandoc-2.2.2.1-1-amd64.deb25.08 MB
9/bin/sh -c apt-get -y update62.64 MB
10ENV PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
11/bin/sh -c curl -fsSL -o206.52 MB
12/bin/sh -c conda install -y92.69 MB
13/bin/sh -c mkdir mcr_install &&4.13 GB
14ENV BrainSuiteMCR=/usr/local/MATLAB/MATLAB_Runtime/R2023a/0 B
15ENV PYTHONPATH=0 B
16/bin/sh -c pip install importlib-metadata==4.6.390.31 KB
17/bin/sh -c git config --global157 B
18/bin/sh -c git clone https://github.com/nipy/nipype101.93 MB
19/bin/sh -c curl -sSL "http://neuro.debian.net/lists/$(14.61 KB
20/bin/sh -c apt-get update &&113.44 MB
21/bin/sh -c apt-get update &&26.88 MB
22/bin/sh -c pip uninstall -y22.02 MB
23/bin/sh -c pip install tqdm==4.62.3179.69 MB
24/bin/sh -c npm install -g38.91 MB
25/bin/sh -c apt-get update &&32.4 MB
26/bin/sh -c apt-get install -y7.45 MB
27/bin/sh -c cd / &&1.66 MB
28/bin/sh -c chmod -R ugo+rx1.66 MB
29/bin/sh -c apt-get update &&98.64 MB
30/bin/sh -c Rscript -e "install.packages(c('iterators',90.26 MB
31/bin/sh -c pip install rpy2==3.4.51.71 MB
32/bin/sh -c conda config --set205 B
33/bin/sh -c conda install -y284.9 MB
34/bin/sh -c conda install -y116.4 MB
35ENV FSLDIR6=/usr/local/miniconda/0 B
36ENV FSLOUTPUTTYPE=NIFTI_GZ0 B
37/bin/sh -c sed -i 's/FSLDIR/FSLDIR6/'300 B
38/bin/sh -c sed -i 's/FSLDIR/FSLDIR6/'1.16 KB
39/bin/sh -c apt-get install -y6.75 MB
40/bin/sh -c cd /usr/lib/x86_64-linux-gnu &&206 B
41/bin/sh -c pip install scipy==1.253.65 MB
42ENV BrainSuiteVersion=23a0 B
43/bin/sh -c wget --no-check-certificate https://brainsuite.org/data/BIDS/BrainSuite${BrainSuiteVersion}_BIDS.tgz1.45 GB
44/bin/sh -c Rscript -e 'install.packages("/opt/BrainSuite23a/bstr/bstr_0.4.1.tar.gz",578.25 KB
45ENV PATH=/opt/BrainSuite23a/bin/:/opt/BrainSuite23a/svreg/bin/:/opt/BrainSuite23a/bdp/:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
46/bin/sh -c mkdir /usr/libtiff &&513.77 KB
47ENV TIFF_LD_PATH=/usr/libtiff/0 B
48ENV BFP=/opt/BrainSuite23a/bfp0 B
49ENV PATH=/opt/BrainSuite23a/bfp:/opt/BrainSuite23a/bin/:/opt/BrainSuite23a/svreg/bin/:/opt/BrainSuite23a/bdp/:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
50COPY multi:a325e4ecc6b22abe75e6a7a86fe09d6aaeae9f0f2a2212746a27e296617f8066 in /nipype/nipype/interfaces/brainsuite/ 22.55 KB
51COPY file:52272faa56d487b7eb84ab619d7a628ac4e544909cae08b3d007918b4e92f4d0 in /nipype/nipype/interfaces/fsl/ 12.59 KB
52COPY multi:755c48158cbcb0d6b2b461b99538a8a45c913034cdee660376d309e275b4c822 in /usr/local/miniconda/lib/python3.7/site-packages/eddy_qc/QUAD/ 6.1 KB
53/bin/sh -c sed -i 's/EpiReg/EpiReg,1.18 KB
54COPY file:47b38ce5c2696bd853d93740dfb98a73fc0e851c7c0cbd4cb06fe0474cc2ada7 in /config.ini 1.46 KB
55COPY file:0af5ebd7f8a8174f4d03c678dc87617ae7e2eac7c517528488954a89a5a2ca6e in /bfp_config_stats.ini 1.22 KB
56COPY dir:6452560bff42acf973dfa61c08b990759ae047f2ec6db86666fb9a8c584e5b21 in /BrainSuite 19.12 MB
57/bin/sh -c chmod -R ugo+rx251.5 MB
58/bin/sh -c chmod ugo+rx /BrainSuite/run.py7.33 KB
59ENV PATH=/BrainSuite/QC/:/opt/BrainSuite23a/bfp:/opt/BrainSuite23a/bin/:/opt/BrainSuite23a/svreg/bin/:/opt/BrainSuite23a/bdp/:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
60ENV FSLDIR=/usr/share/fsl/5.00 B
61ENV FSLOUTPUTTYPE=NIFTI_GZ0 B
62ENV PATH=/usr/share/fsl/5.0/bin:/BrainSuite/QC/:/opt/BrainSuite23a/bfp:/opt/BrainSuite23a/bin/:/opt/BrainSuite23a/svreg/bin/:/opt/BrainSuite23a/bdp/:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
63ENV LD_LIBRARY_PATH=/usr/lib/fsl/5.00 B
64/bin/sh -c echo "set enable-bracketed-paste161 B
65ENTRYPOINT ["/BrainSuite/run.py"]0 B

Command

ADD file:4b2eb5cd0b37ca0154f3c5ad9212f5bc7244a35806395a9c76a96723d708b83a in /