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bcgsc/orca:2017.10.12

Manifest digest

sha256:2c768e0e4e70c9a64ddcc0183b01c25fdd9d2075ba8cbba39fde6914848a7810

OS/ARCH

linux/amd64

Compressed size

10.81 GB

Last pushed

over 8 years by sjackman

Type

Image

Manifest digest

sha256:2c768e0e4e70c9a64ddcc0183b01c25fdd9d2075ba8cbba39fde6914848a7810

Image Layers

Image Layers

1ADD file ... in / 45.41 MB
2/bin/sh -c set -xe &&850 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*618 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'851 B
5/bin/sh -c mkdir -p /run/systemd168 B
6CMD ["/bin/bash"]0 B
7LABEL maintainer=Shaun Jackman <[email protected]>0 B
8/bin/sh -c apt-get update &&130.21 MB
9/bin/sh -c mkdir -p /usr/share/rubygems-integration/all/gems/rake-10.5.0/bin243 B
10/bin/sh -c localedef -i en_US416.83 KB
11ADD dir:91583dceb2ae51ffdc2298693995842ef684275fc3cc0faf374316a784e11e7b in /home/linuxbrew/.linuxbrew/Homebrew 2.39 MB
12/bin/sh -c mkdir /home/linuxbrew/.linuxbrew/bin &&2.39 MB
13USER [linuxbrew]0 B
14WORKDIR /home/linuxbrew0 B
15ENV PATH=/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin SHELL=/bin/bash USER=linuxbrew0 B
16LABEL [email protected]0 B
17ENV PERL5LIB=/home/linuxbrew/perl5/lib/perl50 B
18/bin/sh -c brew install perl155.36 MB
19/bin/sh -c brew install cpanm719.78 MB
20/bin/sh -c brew install ruby160.98 MB
21/bin/sh -c gem install gnuplot2.29 MB
22/bin/sh -c cpanm -i List::MoreUtils::XS52.6 MB
23/bin/sh -c cpanm -i Module::Build4.87 MB
24/bin/sh -c cpanm -i Unix::Processors74.87 KB
25/bin/sh -c cpanm Bio::Perl25.07 MB
26/bin/sh -c brew install python46.11 KB
27/bin/sh -c ln -s python2189 B
28/bin/sh -c brew install python354.89 MB
29/bin/sh -c brew install numpy30.57 MB
30/bin/sh -c pip2 install biopython5.23 MB
31/bin/sh -c brew install libxml218.73 MB
32/bin/sh -c pip2 install python-igraph4.71 MB
33/bin/sh -c pip2 install pysam16.26 MB
34/bin/sh -c pip2 install htseq52.1 MB
35/bin/sh -c pip2 install cwlref-runner7.59 MB
36/bin/sh -c brew install tcsh1.64 MB
37/bin/sh -c brew install homebrew/science/matplotlib27.03 MB
38/bin/sh -c brew install scipy146.83 MB
39/bin/sh -c brew install R219.74 MB
40/bin/sh -c sudo apt-get install981 B
41/bin/sh -c brew install unzip401.83 KB
42/bin/sh -c brew tap homebrew/science45.88 KB
43/bin/sh -c cpanm -i HTML::Entities809.12 KB
44/bin/sh -c cpanm -i Clone332.93 KB
45/bin/sh -c sudo apt-get install716.21 KB
46/bin/sh -c brew install miller2.2 MB
47/bin/sh -c brew install a51.93 GB
48/bin/sh -c brew install augustus215.99 MB
49/bin/sh -c brew install bam-readcount506.2 MB
50/bin/sh -c brew install canu532.62 MB
51/bin/sh -c brew install daligner188.69 MB
52/bin/sh -c brew install e-mem102.77 MB
53/bin/sh -c brew install fasta257.66 MB
54/bin/sh -c brew install gaemr304.7 KB
55/bin/sh -c brew install gatb15.13 MB
56/bin/sh -c brew install gatk36.5 MB
57/bin/sh -c brew install geneid46.42 KB
58/bin/sh -c brew install genewise46.66 KB
59/bin/sh -c brew install genometools116.3 MB
60/bin/sh -c brew install gingr18.76 MB
61/bin/sh -c brew install glimmerhmm86.01 MB
62/bin/sh -c brew install gmap-gsnap64.74 MB
63/bin/sh -c brew install gnuplot20.34 MB
64/bin/sh -c brew install grabix1.25 MB
65/bin/sh -c brew install graphlan29.65 MB
66/bin/sh -c brew install gsl46.49 KB
67/bin/sh -c brew install harfbuzz46.84 KB
68/bin/sh -c brew install hisat17.66 MB
69/bin/sh -c brew install hisat221.91 MB
70/bin/sh -c brew install hlaminer28.58 MB
71/bin/sh -c brew install hmmer46.44 KB
72/bin/sh -c brew install hmmer22.22 MB
73/bin/sh -c brew install htsbox46.4 KB
74/bin/sh -c brew install htslib46.56 KB
75/bin/sh -c brew install humann21.38 GB
76/bin/sh -c brew install icu4c174.68 MB
77/bin/sh -c brew install jellyfish-1.158.81 MB
78/bin/sh -c brew install kaiju34.7 MB
79/bin/sh -c brew install last49.9 MB
80/bin/sh -c brew install m41006.45 KB
81/bin/sh -c brew install maker653.71 MB
82/bin/sh -c brew install mhap466.49 MB
83/bin/sh -c brew install nano66.56 MB
84/bin/sh -c brew install oases348.42 KB
85/bin/sh -c brew install oma8.81 MB
86/bin/sh -c brew install orthofinder28.67 MB
87/bin/sh -c brew install paml8.23 MB
88/bin/sh -c brew install pandaseq1.27 MB
89/bin/sh -c brew install parallel46.29 KB
90/bin/sh -c brew install parsnp37.05 MB
91/bin/sh -c brew install pathd8127.83 KB
92/bin/sh -c brew install pathvisio34.05 MB
93/bin/sh -c brew install pcre46.39 KB
94/bin/sh -c brew install pear188.22 KB
95/bin/sh -c brew install phipack196.05 KB
96/bin/sh -c brew install phlawd16.64 MB
97/bin/sh -c brew install phylip9.75 MB
98/bin/sh -c brew install phyml3.25 MB
99/bin/sh -c brew install phyutility3.1 MB
100/bin/sh -c brew install picard-tools20.8 MB
101/bin/sh -c brew install piler140.41 KB
102/bin/sh -c brew install pilercr349.36 KB
103/bin/sh -c brew install pilon13.1 MB
104/bin/sh -c brew install pixman46.31 KB
105/bin/sh -c brew install plink2.81 MB
106/bin/sh -c brew install pkg-config46.33 KB
107/bin/sh -c brew install poa387.74 KB
108/bin/sh -c brew install poretools170.97 MB
109/bin/sh -c brew install prodigal46.29 KB
110/bin/sh -c brew install prokka280.11 MB
111/bin/sh -c brew install proteinortho558.74 KB
112/bin/sh -c brew install psmc311.71 KB
113/bin/sh -c brew install quast64.13 MB
114/bin/sh -c brew install quest1.45 MB
115/bin/sh -c brew install quorum1.12 MB
116/bin/sh -c brew install racon1.11 MB
117/bin/sh -c brew install rampart244.2 MB
118/bin/sh -c brew install sailfish1.04 GB
119LABEL maintainer=Tatyana Mozgacheva [email protected]0 B

Command

ADD file:5b334adf9d9a2256add2a801b49d4b23c93b0973ec22bb798973d571c948f102 in /