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bcgsc/orca-4:2017.08.23

Manifest digest

sha256:587ad759e2acfcc70e4cfa7710647de18d1d2f8495f25022095137c95e31cc61

OS/ARCH

linux/amd64

Compressed size

8.8 GB

Last pushed

about 9 years by bcgsc

Type

Image

Manifest digest

sha256:587ad759e2acfcc70e4cfa7710647de18d1d2f8495f25022095137c95e31cc61

Image Layers

Image Layers

1ADD file ... in / 64.01 MB
2/bin/sh -c set -xe &&70.92 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*357 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'853 B
5/bin/sh -c mkdir -p /run/systemd162 B
6CMD ["/bin/bash"]0 B
7LABEL maintainer=Shaun Jackman <[email protected]>0 B
8/bin/sh -c apt-get update &&93.85 MB
9/bin/sh -c localedef -i en_US403.86 KB
10ADD dir:ab63825146221d8aa8249ed4e7bb13f268f303a66024769d941f294a7cf375fe in /home/linuxbrew/.linuxbrew/Homebrew 2.38 MB
11/bin/sh -c mkdir /home/linuxbrew/.linuxbrew/bin &&2.38 MB
12USER [linuxbrew]0 B
13WORKDIR /home/linuxbrew0 B
14ENV PATH=/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin SHELL=/bin/bash USER=linuxbrew0 B
15LABEL [email protected]0 B
16ENV PERL5LIB=/home/linuxbrew/perl5/lib/perl50 B
17/bin/sh -c brew install perl154.62 MB
18/bin/sh -c brew install cpanm491 MB
19/bin/sh -c brew install ruby11.12 MB
20/bin/sh -c gem install gnuplot794.46 KB
21/bin/sh -c cpanm -i List::MoreUtils::XS52.62 MB
22/bin/sh -c cpanm -i Module::Build4.86 MB
23/bin/sh -c cpanm -i Unix::Processors75.2 KB
24/bin/sh -c cpanm Bio::Perl25.32 MB
25/bin/sh -c brew install python43.35 KB
26/bin/sh -c ln -s python2202 B
27/bin/sh -c brew install python354.69 MB
28/bin/sh -c brew install numpy30.62 MB
29/bin/sh -c pip2 install biopython5.23 MB
30/bin/sh -c brew install libxml211.75 MB
31/bin/sh -c pip2 install python-igraph4.71 MB
32/bin/sh -c pip2 install pysam16.23 MB
33/bin/sh -c pip2 install htseq52.1 MB
34/bin/sh -c pip2 install cwlref-runner7.26 MB
35/bin/sh -c brew install tcsh1.64 MB
36/bin/sh -c brew install homebrew/science/matplotlib26.9 MB
37/bin/sh -c brew install scipy146.83 MB
38/bin/sh -c brew install R218.02 MB
39/bin/sh -c sudo apt-get install1.13 MB
40/bin/sh -c brew install unzip399.37 KB
41/bin/sh -c brew tap homebrew/science43.12 KB
42/bin/sh -c cpanm -i HTML::Entities809.21 KB
43/bin/sh -c cpanm -i Clone332.35 KB
44/bin/sh -c sudo apt-get install1.35 MB
45/bin/sh -c brew install miller2.2 MB
46/bin/sh -c brew install a51.86 GB
47/bin/sh -c brew install augustus215.62 MB
48/bin/sh -c brew install bam-readcount464.84 MB
49/bin/sh -c brew install canu529.11 MB
50/bin/sh -c brew install daligner188.7 MB
51/bin/sh -c brew install e-mem102.33 MB
52/bin/sh -c brew install fasta252.18 MB
53/bin/sh -c brew install gaemr301.85 KB
54/bin/sh -c brew install gatb15.13 MB
55/bin/sh -c brew install gatk36.5 MB
56/bin/sh -c brew install geneid43.57 KB
57/bin/sh -c brew install genewise43.82 KB
58/bin/sh -c brew install genometools118.7 MB
59/bin/sh -c brew install gingr18.75 MB
60/bin/sh -c brew install glimmerhmm86.01 MB
61/bin/sh -c brew install gmap-gsnap64.74 MB
62/bin/sh -c brew install gnuplot20.06 MB
63/bin/sh -c brew install grabix1.24 MB
64/bin/sh -c brew install graphlan18.36 MB
65/bin/sh -c brew install gsl43.75 KB
66/bin/sh -c brew install harfbuzz44.1 KB
67/bin/sh -c brew install hisat17.66 MB
68/bin/sh -c brew install hisat221.91 MB
69/bin/sh -c brew install hlaminer28.58 MB
70/bin/sh -c brew install hmmer43.75 KB
71/bin/sh -c brew install hmmer22.21 MB
72/bin/sh -c brew install htsbox43.72 KB
73/bin/sh -c brew install htslib43.85 KB
74/bin/sh -c brew install humann21.38 GB
75/bin/sh -c brew install icu4c43.84 KB
76/bin/sh -c brew install idba4.29 MB
77/bin/sh -c brew install igv53.79 MB
78/bin/sh -c brew install igvtools31.38 MB
79/bin/sh -c brew install impute22.92 MB
80/bin/sh -c brew install infernal16.36 MB
81/bin/sh -c brew install iqtree6.38 MB
82/bin/sh -c brew install iva58.91 MB
83/bin/sh -c brew install jellyfish-1.13.36 MB
84/bin/sh -c brew install jellyfish43.82 KB
85/bin/sh -c brew install jpeg43.81 KB
86/bin/sh -c brew install kaiju615.22 MB
87/bin/sh -c brew install last16.24 MB
88/bin/sh -c brew install m4534.93 KB
89/bin/sh -c brew install maker634.93 MB
90/bin/sh -c brew install mhap465.16 MB
91/bin/sh -c brew install nanopolish58.48 MB
92/bin/sh -c brew install oases346.06 KB
93/bin/sh -c brew install oma8.81 MB
94/bin/sh -c brew install orthofinder27.7 MB

Command

ADD file:84479dd43530d358e10fc77876bb6f83e71e1367d959e423f2471e0057c4b424 in /