bcgsc/mavis:v3.1.0

Manifest digest

sha256:3c63a4e2fea06ede61838bf8aca2f249865286b275417a41db371665d7811be8

OS/ARCH

linux/amd64

Compressed size

293.12 MB

Last pushed

almost 4 years by creisle

Type

Image

Manifest digest

sha256:3c63a4e2fea06ede61838bf8aca2f249865286b275417a41db371665d7811be8

Image Layers

Image Layers

1ADD file ... in / 25.88 MB

2CMD ["bash"]0 B

3ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

4ENV LANG=C.UTF-80 B

5/bin/sh -c set -eux; apt-get2.65 MB

6ENV GPG_KEY=0D96DF4D4110E5C43FBFB17F2D347EA6AA65421D0 B

7ENV PYTHON_VERSION=3.7.150 B

8/bin/sh -c set -eux; savedAptMark="$(apt-mark10.19 MB

9/bin/sh -c set -eux; for232 B

10ENV PYTHON_PIP_VERSION=22.0.40 B

11ENV PYTHON_SETUPTOOLS_VERSION=57.5.00 B

12ENV PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/6d265be7a6b5bc4e9c5c07646aee0bf0394be03d/public/get-pip.py0 B

13ENV PYTHON_GET_PIP_SHA256=36c6f6214694ef64cc70f4127ac0ccec668408a93825359d998fb31d24968d670 B

14/bin/sh -c set -eux; savedAptMark="$(apt-mark3.03 MB

15CMD ["python3"]0 B

16WORKDIR /app92 B

17/bin/sh -c apt-get update &&84.3 MB

18/bin/sh -c apt-get install -y988.48 KB

19/bin/sh -c git clone https://github.com/lh3/bwa.git3.8 MB

20/bin/sh -c git clone https://github.com/lh3/minimap2.git3.78 MB

21/bin/sh -c apt-get install -y396.4 KB

22/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/blat/blat &&2.56 MB

23/bin/sh -c git clone https://github.com/ruanjue/wtdbg2.git3.28 MB

24COPY file:2e1449e31ae1100fa1f26e7f367faf72d5f62c67c89f477590e311dd6a0c2579 in setup.py 475 B

25COPY file:27c96aa32c54f4ab3aea8b9322ccb6e88579d7abeb1e5991792013b33473c94b in setup.cfg 1011 B

26COPY file:ce5f030f43d22f7c7868e1b20e673eb33123bc3fe3f5511ec8940c440f830594 in MANIFEST.in 226 B

27COPY file:f4dbe9c2ff2ec2303f53eb452221d231c36a9970777a8f19cd3be2367d3f934e in pyproject.toml 179 B

28COPY dir:662de6cfd6f31b5409d7092ab67602949aa5acff49508ac9c9b801640b0d6cf8 in src 162.49 KB

29COPY file:a674bfc08980006dcd6a50e016a2d7078be01b30fd6aaa36568130bf40e230b5 in LICENSE 11.94 KB

30COPY file:ed7d06421d25eb30973bb0f5fc78de7cb6563fe3d3c94e72534ae8bd37b9d8e0 in README.md 1.29 KB

31/bin/sh -c pip install -U9.9 MB

32/bin/sh -c pip install .142.22 MB

33/bin/sh -c which mavis0 B

34ENTRYPOINT ["mavis"]0 B

Command

ADD file:14c4aa7a136ce9eb1fae0ba0f394509990d44126be801a2713cf8722fbb2e6b9 in /