bcgsc/mavis:v3.0.0-alpha.2

Manifest digest

sha256:2773fbb6bb5b793015a5dc2b499e8b74e0ce107651c9a5a32a4f87e5296b0f37

OS/ARCH

linux/amd64

Compressed size

287.34 MB

Last pushed

over 4 years by creisle

Type

Image

Manifest digest

sha256:2773fbb6bb5b793015a5dc2b499e8b74e0ce107651c9a5a32a4f87e5296b0f37

Image Layers

1ADD file ... in / 25.88 MB

2CMD ["bash"]0 B

3ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

4ENV LANG=C.UTF-80 B

5/bin/sh -c set -eux; apt-get2.64 MB

6ENV GPG_KEY=0D96DF4D4110E5C43FBFB17F2D347EA6AA65421D0 B

7ENV PYTHON_VERSION=3.7.100 B

8/bin/sh -c set -ex &&9.6 MB

9/bin/sh -c cd /usr/local/bin &&233 B

10ENV PYTHON_PIP_VERSION=21.0.10 B

11ENV PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/29f37dbe6b3842ccd52d61816a3044173962ebeb/public/get-pip.py0 B

12ENV PYTHON_GET_PIP_SHA256=e03eb8a33d3b441ff484c56a436ff10680479d4bd14e59268e67977ed40904de0 B

13/bin/sh -c set -ex; savedAptMark="$(apt-mark2.34 MB

14CMD ["python3"]0 B

15WORKDIR /app125 B

16/bin/sh -c apt-get update &&82.97 MB

17/bin/sh -c apt-get install -y1.17 MB

18/bin/sh -c git clone https://github.com/lh3/bwa.git3.75 MB

19/bin/sh -c git clone https://github.com/lh3/minimap2.git3.74 MB

20/bin/sh -c apt-get install -y601.3 KB

21/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/blat/blat &&2.55 MB

22/bin/sh -c git clone https://github.com/ruanjue/wtdbg2.git3.28 MB

23COPY file:760be2664d7f4822edf903661215ba48c051b12a65ff83d49c2e7cd30f9e61e1 in setup.py 474 B

24COPY file:6803c869822a752dd934f989206a3818a8dc7b9049a53a884b37c2ed233b9b70 in setup.cfg 1006 B

25COPY file:db0ed7360017e071e687d388bb9606006de95719d70b3ce092e4a20c04d6c847 in MANIFEST.in 229 B

26COPY file:674c4d9266a3b0399859453d94cc2f82a91e4f8319547ee7a0c62495c32fe953 in pyproject.toml 179 B

27COPY dir:63b6accf7d21a4fdf06a669d03d8bf47c1c1cfe93f1e9073c43fa276cbd42b8f in src 160.97 KB

28COPY file:48d5cbd0ae13b524fb22edc764fd7fdbf50eecacd7fee9cc57fb76eb283d84bc in LICENSE 11.94 KB

29COPY file:414b1694043baa61628278d66c0cbe0d83f082165a2c369e2973794ad670f1d1 in README.md 1.29 KB

30/bin/sh -c pip install -U9.36 MB

31/bin/sh -c pip install .139.3 MB

32/bin/sh -c which mavis0 B

33ENTRYPOINT ["mavis"]0 B

Command

ADD file:c855b3c65f5ba94d548d7d2659094eeb63fbf7f8419ac8e07712c3320c38b62c in /